PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01025100001
Common NameLOC100246815, VIT_06s0004g03590
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family AP2
Protein Properties Length: 479aa    MW: 51899.2 Da    PI: 6.5651
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01025100001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56e-17137186155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  GSVIVT01025100001 137 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 186
                        78*******************......55************************997 PP

2AP241.24.1e-13229279155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  GSVIVT01025100001 229 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 279
                        89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.82E-16137195IPR016177DNA-binding domain
PfamPF008475.5E-9137186IPR001471AP2/ERF domain
PROSITE profilePS5103217.794138194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-17138195IPR001471AP2/ERF domain
SMARTSM003808.0E-33138200IPR001471AP2/ERF domain
CDDcd000181.63E-11138196No hitNo description
CDDcd000184.58E-26229289No hitNo description
PfamPF008471.2E-8229279IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-17229288IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-15230287IPR001471AP2/ERF domain
SMARTSM003802.5E-32230293IPR001471AP2/ERF domain
PROSITE profilePS5103215.527230287IPR001471AP2/ERF domain
PRINTSPR003675.1E-6231242IPR001471AP2/ERF domain
PRINTSPR003675.1E-6269289IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MLDLNLNVGS SDSTQHGDSV VGSEKFPEGS GTQMDESGTS NSSIVNAEAS SNGGGDDDSC  60
STRAGDAFSL NFDILKVGDC GSPNDVVTRQ LFPMSAGGGV GGDSVFFQGQ VAQQHPQPQQ  120
QQQPVKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA HAAARAYDRA  180
AIKFRGVDAD INFNLSDYDE DLKQMKNLTK EEFVHILRRQ STGFSRGSSK YRGVTLHKCG  240
RWEARMGQFL GKKYIYLGLF DSEVEAARAY DKAAIKCNGR EAVTNFEPST YEGEMIPEAS  300
NEGSDHNLDL NLGISPPLSN GPKEIDGLGH LQFHSGSHDA HNGRRSMMEN PNIETAGDPS  360
FKGLAMTSEH PPLWTGVYPS FFPGYEERAT ERRIEASSSQ GLPNWGWQMH GQVTATPMPL  420
FSTAASSGFS SSATTAPSAA ILSSKPPNTT SHSICFASSA SAVTHPSQYY FQMKPPPP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.34740.0bud| fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4379180.0AM437918.1 Vitis vinifera contig VV78X091249.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284749.20.0PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ9SK031e-121RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLF6GTW60.0F6GTW6_VITVI; Putative uncharacterized protein
STRINGVIT_06s0004g03590.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-129related to AP2.7